years ago, a ford body shop had to repair my 00 V6, they called me to come and pick it up, they were kind enough to power wash under the hood while i was signing for everything, hop in the car and it is running like sh!t, asked the guy about it and he made up some bull about how perfect it was when he gave it the test drive personally. and he said it should smooth out in just a minute or two of driving on the way home, well i said it sounds like a load to me but hes the guy that knows what is going on, not me. long story short, got about two miles away and it got ten times worse and the CEL started flashing, well i turned it right around and drove it back to them and told them to call me when it was back to the way it was supposed to be, guy called me later that day and tried to tell me that i must have done something before i brought it in that damaged the cats, even longer story cut shorter, a week later, i had a new set of cats for the price of "on the house"
bottom line, if a V6 starts running like crap after any encounter with water, shut the motor off right away until everything is 100% dry